
This is a partial list of zoos in Japan. For aquaria, see List of aquaria in Japan.

Adventure World(ja: 白浜アドベンチャーワールド, Shirahama Adventure World) is a theme park that integrates a zoo, a public aquarium, and an amusement park in the town on Shirayama, Wakayama Prefecture, Japan. It is operated by Hours Co., Ltd. (AWS), an affiliate of Marusue Co., Ltd. headquartered in Matsubara City, Osaka Prefecture. When it first opened on April 22, 1978, it was called "Nanki Shirahama World Safari."

The Akita Omoriyama Zoo , also known as “Milve”, is a municipal zoo opened in July 1967 in the city of Akita, Akita Prefecture, Japan. Opened in 1972, the zoo covers 15 hectares, with 114 species on display. It is accredited by the Japanese Association of Zoos and Aquariums (JAZA).

The Asahiyama Zoo is a municipal zoo opened in July 1967 in Asahikawa, Hokkaidō, Japan, and is the northernmost zoo in the country. In August 2004, over 320,000 people visited the zoo, the second highest number of visitors among all the zoos in Japan. Located in Higashi Asahikawa, on the outskirts of Asahikawa, the Asahiyama Zoo is accredited by the Japanese Association of Zoos and Aquariums (JAZA).
The Atagawa Tropical & Alligator Garden is a botanical garden with alligators located in the Fuji-Hakone-Izu National Park at 971-9 Naramoto, Higashiizu-cho, Kamo, Shizuoka Prefecture, Japan. It is open daily. An admission fee is charged.

The Chiba Zoological Park is located in Chiba Prefecture, east of Tokyo, Japan, and near the shore of Tokyo Bay. The park can be accessed by the Chiba Monorail and is open between 9:30am and 4:30pm.

Edogawa City Natural Zoo or Edogawa City Natural Zoo is a zoo located in Edogawa, Tokyo Prefecture, Japan.

The Fukuoka Municipal Zoo and Botanical Garden , also known as the Fukuoka City Zoological Garden, is a zoo and botanical garden established in 1953 and located within Minami-koen at 1-1, Minami-Koen, Chūō-ku, Fukuoka, Fukuoka, Japan.

The Higashiyama Zoo and Botanical Gardens is a joint zoo and botanical garden located at Chikusa-ku, Nagoya, Japan. It is open every day except Monday, and charges a modest admission fee.

Hiroshima City Asa Zoological Park is a zoo in Hiroshima, Japan.

Inokashira Park Zoo is a city zoo in Musashino, Tokyo. It is in a corner of Inokashira Park near the Ghibli Museum. A branch of the zoo is in Mitaka. It opened on May 17, 1942.

Izu Shaboten Zoo is a zoological park and botanical garden in Itō, Shizuoka, Japan. Founded in 1959, the zoo is currently notable for its exhibited capybaras and succulent greenhouses and is open year-round.

Kobe Animal Kingdom is an animal and flower park located on Port Island in Kobe, Japan. It is mainly located in and around a greenhouse. It was called Kobe Kachoen until 18 July 2014. It is one of several theme parks created by Japanese botanist and collector Kamo Mototeru, and was opened on 15 March 2006. This all-weather park is based on the concept of contact with birds and flowers. In the park, visitors are able to touch and feed birds.

Kōbe Ōji Zoo , or simply Kobe Zoo or Ōji Zoo (王子動物園), is a municipal zoo in Kobe, Japan.

Kyoto City Zoo (京都市動物園) is a zoo located in Sakyō ward, Kyoto and was established in 1903, making it the second oldest zoo in the country after Ueno Zoo in Tokyo.
Sabae City's Nishiyama Zoo is a small zoo in the city of Sabae, Fukui Prefecture, Japan. The admission-free municipal zoo is on a low hill. It is known for its red pandas; the species is the official animal of the city.
Nogeyama Zoological Gardens is a free zoo opened in April 1951 and located in Nogeyama Park, in Nishi-ku, Yokohama, Japan. It covers 9.6 hectares and houses about 1400 animals of 100 different species. It is open from 9:30 am to 4:00 pm and is closed on Mondays.

Obihiro is a city in Tokachi Subprefecture, Hokkaido, Japan. Obihiro is the only designated city in the Tokachi area. As of February 29, 2020, the city has an estimated population of 165,851. The next most populous municipality in Tokachi is the adjacent town of Otofuke, with less than a third of Obihiro's population. The city had approximately 500 foreign residents in 2008. The city contains the headquarters of the Fifth Division of the Northern Army of the Japan Ground Self-Defense Force. It also hosts the Rally Japan World Rally Championship-event.

Rakuju-en (楽寿園) is a public park with a Japanese garden and zoo, located in the city of Mishima, Shizuoka Prefecture, Japan. It was designated as a National Place of Scenic Beauty of Japan and well as a Natural monument of Japan in 1954. In 2012, the Rakuju-en was designated as part of the Izu Peninsula Geopark
Sapporo Maruyama Zoo is a municipal zoo in Chūō-ku, Sapporo, Hokkaido, Japan. It opened on May 5, 1951.

The Tama Zoological Park is a zoo, owned by the government of Tokyo Metropolis, and located in Hino, Tokyo, Japan. The Tama Zoo was opened on May 5, 1958, originally as a branch of the Ueno Zoo. The zoo aims to use its large site – 52 ha, compared to the 14.3 ha of the Ueno Zoo – to show its animals moving in a more free and natural environment.


Tobu Zoo is a combination of a zoo and an amusement park located in Miyashiro, Saitama Prefecture, Japan.
The Ueno Zoo is a 14.3-hectare (35-acre) zoo, managed by the Tokyo Metropolitan Government, and located in Taitō, Tokyo, Japan. It is Japan's oldest zoo, opened on March 20, 1882. It is a five-minute walk from the Park Exit of Ueno Station, with convenient access from Tokyo's public-transportation network. The Ueno Zoo Monorail, the first monorail in the country, connects the eastern and western parts of the grounds.