
Alien Carnage, originally released as Halloween Harry, is a side-scrolling platform game developed by Interactive Binary Illusions and SubZero Software, and distributed by Apogee Software. The game features 256-colour VGA graphics and background music in MOD format. Alien Carnage is composed of four episodes. The first episode was released as shareware, and the rest were distributed commercially. In May 2007, John Passfield and 3D Realms released Alien Carnage as freeware. In 2014, the game was re-released with Windows support.

Arctic Adventure is a platform game written for DOS, published by Apogee Software. It is the sequel to Pharaoh's Tomb. The protagonist, Nevada Smith, is an archaeologist searching for a Viking treasure in the Arctic. It was re-released on Steam in 2015 with support for Windows and macOS.

Bio Menace is a 2D, side-scrolling, platform game developed and published by Apogee Software for DOS. It was set for release in November 15, 1991 but due to re-configuring the engine that was used in Commander Keen in Goodbye, Galaxy, it took two years to develop. It was built on a licensed version of id Software's Commander Keen game engine, and was known as Bio Hazard during production. Apart from the engine and music, all in-game content was created by the game's designer, Jim Norwood. In 2014, the game was re-released on Steam, and in 2015 on GOG.com with support for Windows, macOS, and Linux.

Blake Stone: Aliens of Gold is a first-person shooter for DOS created by JAM Productions and published by Apogee Software in 1993. The following year, a sequel called Blake Stone: Planet Strike was released, which continues where Aliens of Gold leaves off. Some copies of the game provided a Command Control Gravis Gamepad.

Blake Stone: Planet Strike is a first-person shooter video game, the sequel to Blake Stone: Aliens of Gold, made by JAM Productions and released for DOS on October 28, 1994, by Apogee Software.

Boppin' is a puzzle-oriented video game created by Jennifer Diane Reitz in 1991, developed under the company name Accursed Toys and published by Karmasoft for the Amiga computer with only 32 colors on screen. Around that time Karmasoft held a level design contest. The game sold poorly with 284 copies, so Jennifer got it republished by Apogee Software with up to 256 colors on screen. Due to mature content containing blood and Seppuku, the game was rated for players aged 25.

Commander Keen in Goodbye, Galaxy is a two-part episodic side-scrolling platform video game developed by id Software and published by Apogee Software in 1991 for DOS. It consists of the fifth and sixth episodes of the Commander Keen series, though they are numbered as the fourth and fifth, as Commander Keen in Keen Dreams is outside of the main continuity. The game follows the titular Commander Keen, an eight-year-old child genius, as he first journeys through the Shadowlands to rescue the Gnosticenes so they may ask the Oracle how the Shikadi plan to destroy the galaxy, and then through the Shikadi's Armageddon Machine to stop them. The two episodes feature Keen running, jumping, and shooting through various levels while opposed by aliens, robots, and other hazards.

Commander Keen in Invasion of the Vorticons is a three-part episodic side-scrolling platform video game developed by Ideas from the Deep and published by Apogee Software in 1990 for MS-DOS. It is the first set of episodes of the Commander Keen series. The game follows the titular Commander Keen, an eight-year-old child genius, as he retrieves the stolen parts of his spaceship from the cities of Mars, prevents a recently arrived alien mothership from destroying landmarks on Earth, and hunts down the leader of the aliens, the Grand Intellect, on the alien home planet. The three episodes feature Keen running, jumping, and shooting through various levels while opposed by aliens, robots, and other hazards.

Cosmo's Cosmic Adventure: Forbidden Planet is a video game programmed by Todd Replogle and published by Apogee Software. It is a two-dimensional side-scrolling platform game. Its working titles were "The Adventures of Zonk" and "Cosmo Kid from Space", but Stephen Hornback ultimately gave it the final name. The game was released in mid March 1992 on the DOS platform.

Crystal Caves is a side-scrolling platform video game, developed and published by Apogee Software for IBM PC compatibles.

Dark Ages is a platform game written for DOS, published by Apogee Software. It was the first shareware game to feature music for the AdLib sound card.

Death Rally is a vehicular combat racing video game developed by Remedy Entertainment, published by Apogee Software and distributed by GT Interactive. Originally known as HiSpeed during development, it was released on 7 September 1996 for MS-DOS. In the game, the player starts with $495 and a weak car named Vagabond, and must compete in deadly races where all cars are armed. The player wins money by finishing in front positions, collecting money bonuses during the race, fulfilling missions and destroying other cars. The ultimate goal of the game is defeating the "Adversary", the undisputed king of Death Rally, in a one-on-one race.

Duke Nukem is a 2D platform game developed and published by Apogee Software, featuring the adventures of the fictional character Duke Nukem. The game was followed by another 2D scroller, Duke Nukem II, in 1993. The series made the jump to 3D graphics with Duke Nukem 3D in 1996, which became the most popular of the three games.

Duke Nukem II: Escape From Alien Abductors! is a platform game developed by Apogee Software and released December 3, 1993. The game consists of four episodes, the first available as shareware. It is the follow-up to 1991's Duke Nukem, and followed by Duke Nukem 3D in 1996. Todd Replogle was the primary designer of all three games.

Kroz is a series of Roguelike video games created by Scott Miller for IBM PC compatibles. The first episode in the series, Kingdom of Kroz, was released in 1987 as Apogee Software's first game. It was also published on Big Blue Disk #20. Kroz introduced the scheme of the first episode being free and charging money for additional episodes; a technique which defined the business model for Apogee and was adopted by other MS-DOS shareware publishers.

Major Stryker is a 2D vertical scrolling shooter game written for DOS by Apogee Software. Its working title was "Strike Force" and was released in January 1993. It consists of three episodes, with the first episode distributed as shareware, and the rest available commercially. The three episodes are set on a Lava Planet, an Arctic Planet and a Desert Planet. The game was re-released as freeware on March 14, 2006, and on Steam with support for Microsoft Windows and macOS in 2014.

Math Rescue is a 1992 educational platform game created by Karen Crowther of Redwood Games and published by Apogee Software. Its early pre-release title was "Number Rescue". Released in October, 1992, for the DOS platform, it is a loose successor to the earlier game Word Rescue, whose game engine was used to power the new game with minor changes. Math Rescue was initially released as shareware but later achieved a retail release. It was followed by Math Rescue Plus. There were plans to have a sequel to the game called "Gruzzle Puzzles" but it was never started.

Monster Bash is a side-scrolling platform video game developed and published by Apogee Software on 9 April 1993 for DOS. The game features 16-color EGA graphics and IMF AdLib compatible music. It was developed by Frank Maddin and Gerald Lindsly.

Monuments of Mars is a third-person puzzle platform video game developed by Scenario Software for DOS and published by Apogee Software. The game consists of four 20-level episodes, the first episode being shareware, the rest being commercial software. It is similar to the games Arctic Adventure and Pharaoh's Tomb but uses an unrelated engine.

Mystic Towers is a video game created by Australian developer Animation F/X and published by Manaccom domestically and Apogee Software internationally. Originally exclusive to DOS, it was re-released on Steam in 2015 with Windows and Mac OS support. It stars Baron Baldric, an old wizard with a magic staff and an array of amusing mannerisms, who must quest through twelve towers and rid them of monsters. Mystic Towers is a sequel to Baron Baldric: A Grave Adventure, a platform game in which Baron Baldric battled an evil sorcerous ancestor. The earlier game, originally written for the Amiga and later ported to the PC, was published by Manaccom and not released outside of Australia.

Paganitzu is a Sokoban-like tile-based puzzle game created by Keith Schuler and published by Apogee Software for IBM PC compatibles. It is the sequel to an earlier game named Chagunitzu. Paganitzu was published in three episodes: "Romancing the Rose","The Silver Dagger," and "Jewel of the Yucatan." The first was made available as shareware. In 2015, it was re-released on Steam with Microsoft Windows and macOS support.

Pharaoh's Tomb is a DOS platform game created by George Broussard and published by Apogee Software.

Raptor: Call of the Shadows is a 2D vertical-scroller single player game developed by Cygnus Studios and published by Apogee Software. Its working title was "Mercenary 2029". It was released on April 1, 1994 for DOS.

Realms of Chaos is a platform game written for DOS, published by Apogee Software as shareware. The game was authored by Keith Schuler, who had previously designed Paganitzu, and was originally to be a sequel entitled Alabama Smith and the Bloodfire Pendant. It is still sold by Apogee. Like previous platform Apogee games, this one utilized the FAST engine. The game was re-released in 2013 on GOG.com with support for Windows, macOS, and Linux.

Rise of the Triad: Dark War is a first-person shooter video game, developed and published by Apogee Software in 1995. The player can choose one of five different characters to play as, each bearing unique attributes such as height, speed, and endurance. Its remake was designed by Interceptor Entertainment and released by Apogee Games in 2013. There is also shareware version called Rise of the Triad: The HUNT Begins. The video game began as a follow-up game to the original Wolfenstein 3D, but was soon altered and became a stand alone game. It includes both single-player and multi-player functions, allowing individuals to connect with other gamers and tackle missions as a team. Its main objective is to proceed through levels of increasing difficulty in order to win. Since its original release in 1995, its popularity has allowed for both sequels, such as Rise of the Triad: The HUNT Begins, and remakes, such as the 2013 edition of Rise of the Triad.

Rise of the Triad is a first-person shooter developed by Interceptor Entertainment and published by Apogee Software, LLC for Microsoft Windows in 2013. The game is a remake of the original Rise of the Triad: Dark War published by the former Apogee Software in 1995.

ScubaVenture: The Search for Pirate's Treasure is a 1993 action video game. The game was developed by Apogee on contract for Softdisk in 1991, and was marketed as a Softdisk game; Apogee developed the title on behalf of id Software, in order to let them focus on developing Wolfenstein 3D (1992).

Secret Agent is a side-scrolling platform video game, developed and published by Apogee Software. It was intended for release on October 1, 1991 but was delayed and ended up by being released exactly four months later. It was re-released in 2013 on GOG.com with support for Windows, Mac OS, and Linux.

Stargunner is a 1996 horizontal scrolling shooter computer game published by Apogee Software and released for DOS and Windows.

Wacky Wheels is an MS-DOS arcade kart racing video game released by Apogee Software in 1994. The game strongly resembles Super Mario Kart from the Super NES, but the karts are described as lawn mowers and the eight playable characters are animals from a zoo. It was released on GOG.com with support for Windows, Linux and macOS on August 20, 2014 and later released on Steam on May 6, 2015 as part of the 3D Realms Anthology.

Wolfenstein 3D is a first-person shooter video game developed by id Software and published by Apogee Software and FormGen. Originally released on May 5, 1992 for DOS, it was inspired by the 1981 Muse Software video game Castle Wolfenstein, and is the third installment in the Wolfenstein series. In Wolfenstein 3D, the player assumes the role of Allied spy William "B.J." Blazkowicz during World War II as he escapes from the Nazi German prison Castle Wolfenstein and carries out a series of crucial missions against the Nazis. The player traverses each of the game's levels to find an elevator to the next level or kill a final boss, fighting Nazi soldiers, dogs, and other enemies with knives and a variety of guns.

Xenophage: Alien Bloodsport is a fighting game written for MS-DOS, by Apogee Software.